Levionnois 1a

non-invasive oscillometric blood pressure measurement at the tongue in anaesthetised horses

Validation of non-invasive oscillometric blood pressure measurement at the tongue against invasive arterial blood pressure in anaesthetised horses

Arterial blood pressure is one of the most important variables monitored during general anaesthesia, since both hypotension and hypertension can compromise the perfusion of vital organs. The reference method, direct (invasive) measurement through an arterial catheter, is not always feasible in clinical patients, so anaesthetists rely on non-invasive oscillometric devices. The reliability of these measurements depends strongly on the cuff site, and any new site must be validated against the invasive reference before it can be recommended for clinical use.

With the financial support of the UniBern Forschungsstiftung, we were able to acquire a SunTech Vet25e veterinary monitor (Fig. 1), which measures non-invasive blood pressure (NIBP) using oscillometric technology. An appropriately sized cuff (manchette) can be positioned at several body sites; in this project we evaluated the tongue (Fig. 2), a site that is easily accessible in the intubated, anaesthetised horses.

The aim of the study is to validate NIBP measured at the tongue against simultaneously recorded invasive arterial blood pressure, following the recommendations of the American College of Veterinary Internal Medicine (ACVIM) for the validation of indirect blood-pressure devices. In horses under general anaesthesia in which an arterial catheter was placed for clinical reasons, paired tongue-NIBP and invasive readings were recorded at the same moment (Fig. 3) across a wide range of pressures. Systolic, mean and diastolic values were compared using Bland–Altman analysis (bias and limits of agreement), and the agreement was assessed against the ACVIM targets.

A preliminary analysis of 78 paired measurements from 14 horses — spanning invasive systolic pressures of 78–156 mmHg, from hypotension to hypertension — has been performed. Relative to the invasive reference, tongue-NIBP showed a mean bias (± SD) of −6.4 ± 16.4 mmHg for systolic, −2.9 ± 12.7 mmHg for mean and +3.1 ± 11.3 mmHg for diastolic arterial pressure, with 95% limits of agreement of −38.5 to +25.8, −27.8 to +22.0 and −18.9 to +25.2 mmHg, respectively. These early results suggest that the tongue is a feasible non-invasive measurement site — most reliable for mean and diastolic pressure — when conventional cuff positions are not accessible.

Med. vet. Andrei Berbecaru, DVM, MSc
Anaesthesiology and Pain Therapy Section

Vetsuisse Faculty, University of Bern

Figure 1. SunTech Vet25e veterinary monitor.
Figure 2. Oscillometric cuff (manchette) at the tongue.
Figure 3. Simultaneous invasive arterial curve and non-invasive (tongue) reading.
pisentiberto kl

Biofilm Analysis in Dental Caries Research

Biofilm Analysis in Dental Caries Research

Our research focuses on understanding the mechanisms underlying dental caries and erosive tooth wear, with particular interest in the role of oral biofilms and novel biofilm management strategies. In recent years, our group has investigated the potential of natural compounds, such as polyphenols, to modulate oral biofilms and the salivary pellicle, with the aim of developing new preventive strategies against caries and dental erosion.

With the support of the  the UniBern Forschungsstiftung via the BEKB Förderfonds funding pool, we acquired new laboratory infrastructure that enables advanced molecular investigations of dental biofilms, saliva, and acquired enamel pellicle components for both in vitro and clinical studies.

The devices – an automated colony counter for optimized biofilm quantification (Figure 1A), an OD600 photometer for inoculum standardization (Figure 1B), a thermoshaker for molecular biology applications with exchangeable block (Figure 1C) and a cooling high-speed centrifuge (Figure 1C) – support investigations of novel antimicrobial compounds, as well as sample preparation for PCR-based analyses, oral microbiome sequencing, and proteomics, to study the oral biofilm composition, virulence, and interactions with dental tissues.

Dr. Luciana Pisenti Berto

Prof. Dr. Thiago Saads Carvalho

Klinik für Zahnerhaltung, Präventiv- und Kinderzahnmedizin

Die Projektförderung wurde ermöglicht durch einen Beitrag des BEKB Förderfonds
Figure 1. Acquired devices. (A) Automated colony counter. (B) OD600 photometer. (C) Thermoshaker with exchangeable block and cooling high-speed centrifuge.
Degen1

Modeling the human lip using lip-derived cells

Modeling the human lip using lip-derived cells

To provide the scientific community with the most clinically relevant study tool and to better understand lip epithelial biology, we aim to establish 3D human lip models using primary keratinocytes. So far, such a system is not available which is due to the lack of human lip tissue and the complex anatomical structure of lip tissue.

We isolate primary lip keratinocytes from surplus lip tissue that has to be excised during routine surgical cleft lip repair. This tissue is otherwise discarded but provides us with the ideal source for lip keratinocyte extractions. The human lip is a complex anatomical structure and represents a mucocutaneous junction where labial skin transitions into the oral mucosa (Figure 1). Consequently, an optimal lip model should be compromised of labial skin and oral mucosal keratinocytes that meet in a transition zone. For this purpose, immunohistochemical analyses are of utmost importance as they allow the distinction of keratinizing skin lip keratinocytes from non-keratinizing mucosal keratinocytes.

Fig1: Hematoxylin and Eosin staining of a representative lip tissue biopsy. The oral mucosa (left side) transitions into the labial skin (right side). Taken from Parisi L. et al., 2025.


With the funding provided by the Berne University Research Foundation, we purchased a reliable and temperature-monitoring laboratory-grade microwave oven (Figure 2A) as well as a universal oven (Figure 2B). This equipment is used to establish our own in-house immunohistochemical setup, which enables us to reproducibly stain limited amounts of lip tissues and 3D culture models. It enables us to maintain a standardized immunohistochemistry protocol of both high quality and safety standards, which should guarantee the integrity of the whole project. While the temperature-controlled microwave oven is routinely used in the laboratory to perform heat-induced antigen retrieval, the oven allows us to conduct key steps involved in the paraffin embedding process. Together, these instruments facilitate the whole staining process and represent an important improvement of both safety and quality in our laboratory.

Fig2: (A) Temperature-controlled microwave oven for heat-induced antigen retrieval protocols.
Fig2: (B) Universal oven for key steps in paraffin embedding.


We sincerely thank the Berne University Research Foundation for its valuable support of this work.

PD Dr. Martin Degen

Laboratory for Oral Molecular Biology
Department of Orthodontics and Dentofacial Orthopedics
zmk bern

Zahno3

Handling increased movement variance in complex tasks: Experimental studies in virtual reality

Handling increased movement variance in complex tasks: Experimental studies in virtual reality

From grasping your cup of coffee to cycling through busy traffic, everyday actions require precise and well-coordinated movements. Yet human movement is inherently variable. Because of neuromotor noise, we can never reproduce a movement exactly the same way twice (Faisal et al., 2008). Under certain conditions — such as fatigue or motor disorders — this movement variance increases substantially.

In our research, we investigate the functional mechanisms and strategies that allow humans to handle movement variance. To experimentally test these mechanisms, we developed a virtual reality (VR) throwing task. This experimental setup enables us to assess participants’ strategies while systematically manipulating movement variance. In practical terms, we can simulate conditions of increased motor variance (i.e., making participants‘ throws less precise) and systematically observe how they adapt their movement strategies.

Funding from the Berne University Research Foundation enabled us to purchase a new head-mounted display, controllers, and base stations for motion tracking, which are in use for our current series of VR experiments (see pictures).

Dr. Stephan Zahno

Institute of Sport Science
Movement Science Department

http://www.ispw.unibe.ch

Zahno2
Tomovshort

Automated behavioral testing system for assessment of neurological function in meningitis

Automated behavioral testing system for assessment of neurological function in meningitis

Streptococcus pneumoniae is a bacterium which colonizes the nose and throat asymptomatically in a significant portion of adults and children. In case of immune system imbalance, the bacteria could become invasive and provoke severe infections. The pneumococcus is the leading cause of bacterial meningitis (inflammation of the meninges, the subarachnoid space and the brain tissue), with case fatality rates of around 30% in high-income countries and up to 51% in low-income countries. Long-term effects of the disease are neurological deficits, behavioral changes, impairment of consciousness and learning disabilities which comprise a high burden to recovered patients and healthcare system.

Our lab studies how the pneumococci interact with the body, cause damage to our brain and how our immune system reacts to them. Recently we have been focusing on factors promoting bacterial growth and damage to the brain, as well as novel therapeutic approaches, such as toxin scavenging. When studying the nervous system, evaluation of its function in disease is crucial for generation of high-quality data and transferring experimental findings to the most complex object – the human brain.

Thanks to the generous funding from the UniBern Forschungsstiftung, we were able to purchase an ANYmaze automated behavioral testing system by Stoelting. The system is comprised of a highly sensitive camera and automated software and allows for unbiased evaluation of behavior of experimental animals, such as spontaneous activity (Figure 1) or performance in a wide palette of neurological tests.

The instrument allows us to reliably and objectively track the clinical course of the disease in an experimental model of bacterial meningitis. We were able to reliably demonstrate the crucial role of specific pneumococcal genes for initiation and persistence of infection, seen as alteration of spontaneous activity of the mice, as seen on Figure 2. Thanks to the UniBern Forschungsstiftung, we will be able to apply a whole array of functional tests in our other projects, increasing the translational value of our results and contributing to animal welfare.

Dr. Nikola Tomov

Institute of Anatomy, University of Bern

Figure 1. Line tracks over 5 minutes of spontaneous activity in an open field. The purple line represents the movement of the middle point of the mouse during the test, and the yellow frame is the outline of the apparatus. Shown is a pronounced diminishing of spontaneous activity after an infection with S. pneumoniae and development of meningitis symptoms.
Figure 2. Typical curve of spontaneous activity in a course of meningitis infection with a wild type (red) and a mutant (blue line) S. pneumoniae strains, showing different clinical courses. Note the constant reduction of activity of the wild-type infected animals, and the relative resolution in the ones infected with the mutant strain.
Ringler_preview

Assessing the role of hormones in the regulation of social behaviour in topical frogs

Assessing the role of hormones in the regulation of social behaviour in topical frogs

Our group is interested in the causes and consequences of behavioural variation in animals (https://www.behav.iee.unibe.ch/). We study the evolutionary mechanisms that shape animal behaviour in an ecologically relevant context. Hormones are important signalling molecules that coordinate the expression of multiple aspects of physiology, morphology, and behaviour, and often regulate multiple antagonistic processes. To be able to accurately design ecologically relevant hormonal levels, we need to assess the physiological ranges of the hormones under natural conditions as well as in the lab, which is an important prerequisite for hormonal manipulations.

With the Multiskan SkyHigh Microplate Spectrophotometer (Figure 1) acquired with financial support from the UniBern Forschungsstiftung, we are currently assessing individual hormonal profiles, as it provides fast and accurate measurements enabling complete 96-well plate reading in less than a few seconds.

Besides the direct relevance for a current SNSF project in our group, the spectrophotometer will allow us to identify and quantify other neurohormones of key importance for behavioural regulation in future projects (e.g. the role of oxytocin and vasopressin in regulating paternal care).

Prof. Eva Ringler
Behavioural Ecology – Institute of Ecology and Evolution
Science Faculty

https://www.behav.iee.unibe.ch/

Figure 1. Multiskan SkyHigh Microplate Spectrophotometer
Figure 2. Neotropical poison frogs show a broad range of social behaviours including territoriality, complex courtship, and parental care.
Figure 3. Visual output of the sample concentrations against the calibration curve.
Gross 1-preview

An automated cell counter to automate quantification steps in cell culture

Acquisition of an automated cell counter to automate quantification steps in cell culture

Research on nutrient absorption, intestinal development, and immune function often depends on animal experimentation, making the ethical implications of animal sacrifice a significant concern, especially in those scenarios where induced animal suffering is required to mimic a specific pathological or inflammatory status. The development of cell culture models like organoids grown from stem cells in vitro offers an alternative platform for studying the (patho)-physiology of given diseases.

To ensure precision, reproducibility, and data integrity, it is essential to accurately quantify the number of cultivated cells (intestinal epithelial cells and immune cells). Up to now, we have relied on manual cell counting, a time-consuming and error-prone method that lacks digital traceability. This not only impacts efficiency but also introduces variability in results. With the financial support kindly provided by the UniBern Forschungsstiftung we could acquire an automated cell counting system. This instrument significantly streamlines workflows, reduces human error, and ensures consistent, high-quality data. Moreover, by minimizing handling time, the automatic cell counter improves cell viability, which is critical for downstream analyses.

Intestinal tissues from different species (e.g., swine, rabbit, horse) were successfully cultured and challenged with different inflammatory agents at concomitantly different substrate availability. Our research group aims at establishing a multi-species organoid repository, including healthy and diseased/inflamed tissues, particularly derived from different sections of the intestinal tract. Thus, we can study the persistence of inflammatory phenotypes, and the regulatory pathways involved in maintaining homeostasis and in shaping the mucosal immune response to compounds that may (or may not) promote tissue regeneration and health at a single-organoid level. We evaluate how nutrients, bioactive compounds and environmental pollutants are absorbed, metabolized, and transported within tissues. In the long-term, this platform has the potential to advance the development of more precise, species-specific therapies and nutritional interventions.

Dr. Dora Bordoni
Prof. Dr. Josef Gross

Veterinary Physiology, Vetsuisse Faculty

Figure 1. Representative photomicrographs of a) immunofluorescent staining of pig-derived colon organoids and b) brightfield microscopy depiction of horse-derived jejunal organoids (©Veterinary Physiology).
Figure 2. Automated cell counter quantifying the viability and number of cells organoids (©Veterinary Physiology).
Karousis2

Validation of new human mRNA translation inhibitors derived from a cell-free translation screening

Validation of new human mRNA translation inhibitors derived from a cell-free translation screening

With support from the UniBern Forschungsstiftung, we acquired a luminescence plate reader, enabling the systematic optimisation and application of our human cell-free translation platform. This platform allows rapid, quantitative measurements of translation and has become a core technology in our laboratory.

Using this system, we performed a small-molecule screening that led to the identification of NT-2, a previously uncharacterised Fusarium-derived mycotoxin, as a potent and highly specific inhibitor of human ribosomes. Our study revealed an acute translation inhibition with a ribosome-preservation pathway not previously described for eukaryotic systems1.

Moreover, using the plate reader, we could obtain valuable data to assess the role of Coronaviruses in modulating human gene expression2 and to prepare lysates from different human cell types3,4.


For the acquisition of the plate reader, the UniBern Forschungsstiftung was acknowledged in the following publications from our group:

  1. Schwaller, N., Andenmatten, D., Luginbühl, J., Rabl, J., Chambon, M., Vesin, J., Turcatti, G., and Karousis, E.D. (2025). A human cell-free translation screen identifies the NT-2 mycotoxin as a ribosomal peptidyl transferase inhibitor. Preprint at bioRxiv, https://doi.org/10.1101/2025.10.11.680285
  2. Bäumlin, E., Andenmatten, D., Luginbühl, J., Lalou, A., Schwaller, N., and Karousis, E.D. (2025). The impact of Coronavirus Nsp1 on host mRNA degradation is independent of its role in translation inhibition. Cell Reports 44. https://doi.org/10.1016/j.celrep.2025.115488.
  3. Ziegelmüller, J., Kouvelas, N., Schwaller, N., Thambythurai, P., Hofer, A.M., Mühlemann, O., and Karousis, E.D. (2025). Efficient cell-free translation from diverse human cell types. Journal of Biological Chemistry 0. https://doi.org/10.1016/j.jbc.2025.110307.
  4. Schwaller, N., and Karousis, E.D. (2025). Protocol for monitoring mRNA translation and degradation in human cell-free lysates. STAR Protocols 6, 104073. https://doi.org/10.1016/j.xpro.2025.104073.

Evangelos Karousis, Ph.D.
Junior group leader
University of Bern – Dept of Chemistry, Biochemistry and Pharmaceutical Sciences
karousis.dcbp.unibe.ch